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bioinformatics:public [2014/09/29 13:00]
simroux [Script packages]
bioinformatics:public [2015/07/14 16:02]
simroux [Script packages]
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   * [[bioinformatics:​scripts:​sup05|Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]]\\   * [[bioinformatics:​scripts:​sup05|Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]]\\
-    * This package includes the script used in  [[http://​elifesciences.org/​content/​3/​e03125#​sthash.sskQREWU.dpuf|Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]].+    * This package includes the script used in  [[http://​elifesciences.org/​content/​3/​e03125#​sthash.sskQREWU.dpuf|Roux, S., Hawley, A.K., Torres Beltran, M., Scofield, M., Schwientek, P., Stepanauskas,​ R., Woyke, T., Hallam, S.J., Sullivan, M.B. (doi:​10.7554/​eLife.03125). ​Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]].
  
   *[[bioinformatics:​scripts:​Nature|Viral tagging reveals discrete populations in Synechococcus viral genome sequence space]]\\   *[[bioinformatics:​scripts:​Nature|Viral tagging reveals discrete populations in Synechococcus viral genome sequence space]]\\
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   *[[bioinformatics:​scripts:​cyanophage|Phylogenomics of T4 cyanophages:​ Lateral gene transfer in the '​core'​ and origins of host genes.]]\\   *[[bioinformatics:​scripts:​cyanophage|Phylogenomics of T4 cyanophages:​ Lateral gene transfer in the '​core'​ and origins of host genes.]]\\
       * This includes the scripts used in [[http://​onlinelibrary.wiley.com/​doi/​10.1111/​j.1462-2920.2012.02704.x/​abstract|Ignacio-Espinoza,​ J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages:​ Lateral gene transfer in the '​core'​ and origins of host genes. Environ Microbiol. 14(8), 2113-2126.]]       * This includes the scripts used in [[http://​onlinelibrary.wiley.com/​doi/​10.1111/​j.1462-2920.2012.02704.x/​abstract|Ignacio-Espinoza,​ J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages:​ Lateral gene transfer in the '​core'​ and origins of host genes. Environ Microbiol. 14(8), 2113-2126.]]
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 +  * [[bioinformatics:​scripts:​vsb|Viral dark matter and virus–host interactions resolved from publicly available microbial genomes.]]\\
 +    * This package includes the script used in Roux, S., Hallam, S.J., Woyke, T., Sullivan, M.B. Viral dark matter and virus–host interactions resolved from publicly available microbial genomes.
  
  
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