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Virus Lab, a.k.a. Sullivan Lab - The Ohio State University
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Table of Contents
Tucson Marine Phage Lab's Public Script Repository
Script packages
Data packages
Tucson Marine Phage Lab's Public Script Repository
Script packages
Sequence Analysis Toolkit
A set of general scripts to deal with sequence file format conversion, recruitment plot or synteny plot.
Population Genomics
These scripts are designed to study genetic variability within a given phage population.
Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone
This package includes the script used in “Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone”.
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
This includes the scripts used in Deng, L., Ignacio-Espinoza, J.C., Gregory, A., Poulos, B.T., Weitz, J.S., Hugenholtz, P., Sullivan, M.B. (accepted). Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature.
The Pacific Ocean Virome (POV)
This package includes the scripts used in
Hurwitz, B.L., & Sullivan, M.B. (2013). The Pacific Ocean Virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One. 8(2), e57355.
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Quantitative assessment of concentration, purification and replication in viral metagenomics
This package includes the scripts used in
Hurwitz, B.L., Deng, L., Poulos, B.T., & Sullivan, M.B. (2012). Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environ Microbiol. 15(5), 1428–1440.
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Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes.
This includes the scripts used in
Ignacio-Espinoza, J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes. Environ Microbiol. 14(8), 2113-2126.
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Data packages
taxonomy_data.zip
iplantsampledata.zip
bioinformatics/public.1399326110.txt.gz
· Last modified: 2015/10/15 22:47 (external edit)
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