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bioinformatics:public [2014/05/05 17:49] chrissch |
bioinformatics:public [2015/10/15 22:37] (current) |
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- | * [[bioinformatics:scripts:sup05|Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone]]\\ | + | * [[bioinformatics:scripts:sup05|Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]]\\ |
- | * This package includes the script used in "Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone". | + | * This package includes the script used in [[http://elifesciences.org/content/3/e03125#sthash.sskQREWU.dpuf|Roux, S., Hawley, A.K., Torres Beltran, M., Scofield, M., Schwientek, P., Stepanauskas, R., Woyke, T., Hallam, S.J., Sullivan, M.B. (doi:10.7554/eLife.03125). Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell genomics and metagenomics]]. |
*[[bioinformatics:scripts:Nature|Viral tagging reveals discrete populations in Synechococcus viral genome sequence space]]\\ | *[[bioinformatics:scripts:Nature|Viral tagging reveals discrete populations in Synechococcus viral genome sequence space]]\\ | ||
- | * This includes the scripts used in Deng, L., Ignacio-Espinoza, J.C., Gregory, A., Poulos, B.T., Weitz, J.S., Hugenholtz, P., Sullivan, M.B. (accepted). Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature. | + | * This includes the scripts used in [[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13459.html|Deng, L., Ignacio-Espinoza, J.C., Gregory, A., Poulos, B.T., Weitz, J.S., Hugenholtz, P., Sullivan, M.B. (doi:10.1038/nature13459). Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature.]] |
* [[bioinformatics:scripts:pov|The Pacific Ocean Virome (POV)]]\\ | * [[bioinformatics:scripts:pov|The Pacific Ocean Virome (POV)]]\\ | ||
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*[[bioinformatics:scripts:cyanophage|Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes.]]\\ | *[[bioinformatics:scripts:cyanophage|Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes.]]\\ | ||
* This includes the scripts used in [[http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2012.02704.x/abstract|Ignacio-Espinoza, J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes. Environ Microbiol. 14(8), 2113-2126.]] | * This includes the scripts used in [[http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2012.02704.x/abstract|Ignacio-Espinoza, J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes. Environ Microbiol. 14(8), 2113-2126.]] | ||
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+ | * [[bioinformatics:scripts:vsb|Viral dark matter and virus–host interactions resolved from publicly available microbial genomes.]]\\ | ||
+ | * This package includes the script used in Roux, S., Hallam, S.J., Woyke, T., Sullivan, M.B. Viral dark matter and virus–host interactions resolved from publicly available microbial genomes. | ||