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Tucson Marine Phage Lab's Public Script Repository
- Script packages
- Data packages

Tucson Marine Phage Lab's Public Script Repository

Script packages

Sequence Analysis Toolkit
- A set of general scripts to deal with sequence file format conversion, recruitment plot or synteny plot.

Population Genomics
- These scripts are designed to study genetic variability within a given phage population.

Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone
- This package includes the script used in “Cultivation-independent exploration of SUP05 host-virus interactions in a model Oxygen Minimum Zone”.

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
- This includes the scripts used in Deng, L., Ignacio-Espinoza, J.C., Gregory, A., Poulos, B.T., Weitz, J.S., Hugenholtz, P., Sullivan, M.B. (doi:10.1038/nature13459). Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature.

The Pacific Ocean Virome (POV)
- This package includes the scripts used in Hurwitz, B.L., & Sullivan, M.B. (2013). The Pacific Ocean Virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One. 8(2), e57355.

Quantitative assessment of concentration, purification and replication in viral metagenomics
- This package includes the scripts used in Hurwitz, B.L., Deng, L., Poulos, B.T., & Sullivan, M.B. (2012). Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environ Microbiol. 15(5), 1428–1440.

Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes.
- This includes the scripts used in Ignacio-Espinoza, J.C., & Sullivan, M.B. (2012). Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes. Environ Microbiol. 14(8), 2113-2126.

Data packages

bioinformatics/public.1408577556.txt.gz · Last modified: 2015/10/15 22:47 (external edit)

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