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bioinformatics:scripts:popgen [2014/04/30 19:49] chrissch |
bioinformatics:scripts:popgen [2015/10/15 22:37] |
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| - | ===== Population Genomics ===== | ||
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| - | ==== Recruit2Cloud ==== | ||
| - | {{:bioinformatics:scripts:recruit2cloud1-0-2.py.zip}}\\ | ||
| - | **Author:** Julio Cesar Ignacio-Espinoza\\ | ||
| - | **Last Revision:** Sep 2012\\ | ||
| - | **Description:** Recruit2cloud01.pl takes a series of genome reads, a reference genome, and a blastn of the reference genome (in that order) to generate a COV file. Each line in the COV file corresponds to all the bases found in that position after aligning the reads to the blastn output with muscle. The first-order option and file descriptor and option represent the file with the return-delimited list of genome reads. The second-order option and file descriptor and option represents the file with the reference genome. The third-order option and file descriptor and option represents the file with the blastn output of the reference genome.\\ | ||
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| - | ==== plotSmall ==== | ||
| - | {{:bioinformatics:scripts:plotsmall.pl.zip}}\\ | ||
| - | **Author:** Julio Cesar Ignacio-Espinoza\\ | ||
| - | **Last Revision:** Jan 2013\\ | ||
| - | **Description:** plotSmall\\ | ||
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| - | ==== SizeandLocation ==== | ||
| - | {{:bioinformatics:scripts:sizeandlocation.pl.zip}}\\ | ||
| - | **Author:** Julio Cesar Ignacio-Espinoza\\ | ||
| - | **Last Revision:** Jan 2013\\ | ||
| - | **Description:** SizeandLocation\\ | ||
| - | |||
| - | ==== DetectSynandNonSyn==== | ||
| - | {{:bioinformatics:scripts:DetectSynandNonSyn.pl.zip}}\\ | ||
| - | **Author:** Ann Gregory\\ | ||
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| - | ==== MKselection ==== | ||
| - | {{:bioinformatics:scripts:MKselection.pl.zip}}\\ | ||
| - | **Author:** Ann Gregory\\ | ||
| - | |||
| - | ==== remove_introns ==== | ||
| - | {{:bioinformatics:scripts:remove_introns.pl.zip}}\\ | ||
| - | **Author:** Ann Gregory\\ | ||
| - | |||
| - | ==== unique_fixed_polymorphisms ==== | ||
| - | {{:bioinformatics:scripts:unique_fixed_polymorphisms.pl.zip}}\\ | ||
| - | **Author:** Ann Gregory\\ | ||
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