Differences

This shows you the differences between two versions of the page.

Link to this comparison view

bioinformatics:scripts:popgen [2014/07/01 17:40]
127.0.0.1 external edit
bioinformatics:scripts:popgen [2015/10/15 22:37]
Line 1: Line 1:
-===== Population Genomics ===== 
- 
- 
-==== DetectSynandNonSyn==== 
-{{:​bioinformatics:​scripts:​DetectSynandNonSyn.pl.zip}}\\ 
-**Author:** Ann Gregory\\ 
-**Last Revision:** Apr 2014\\ 
-**Description:​** From an alignment, this script will identify the total number of synonymous and nonsynonymous polymorphisms. 
- 
- 
-==== MKselection ==== 
-{{:​bioinformatics:​scripts:​MKselection.pl.zip}}\\ 
-**Author:** Ann Gregory\\ 
-**Last Revision:** Apr 2014\\ 
-**Description:​** Takes the input from detectsynandnonsyn.pl (above) and runs MK tests and determines if the gene is neutral, under positive selection or purifying selection. 
- 
- 
- 
-==== remove_introns ==== 
-{{:​bioinformatics:​scripts:​remove_introns.pl.zip}}\\ 
-**Author:** Ann Gregory\\ 
-**Last Revision:** Apr 2014\\ 
-**Description:​** Using a list of identified pairs of genes with potential introns, this script removes and concatenates the two gene ends into the singe gene. 
- 
-==== unique_fixed_polymorphisms ==== 
-{{:​bioinformatics:​scripts:​unique_fixed_polymorphisms.pl.zip}}\\ 
-**Author:** Ann Gregory\\ 
-**Last Revision:** Apr 2014\\ 
-**Description:​** Scans an alignment of population from two sites and looks for unique, fixed polymorphisms indicative of local adaptation. 
- 
  
bioinformatics/scripts/popgen.txt ยท Last modified: 2015/10/15 22:37 (external edit)
CC Attribution-Noncommercial-Share Alike 3.0 Unported
www.chimeric.de Valid CSS Driven by DokuWiki do yourself a favour and use a real browser - get firefox!! Recent changes RSS feed Valid XHTML 1.0