recruit2cloud1-0-2.py.zip
Author: Julio Cesar Ignacio-Espinoza
Last Revision: Sep 2012
Description: Recruit2cloud01.pl takes a series of genome reads, a reference genome, and a blastn of the reference genome (in that order) to generate a COV file. Each line in the COV file corresponds to all the bases found in that position after aligning the reads to the blastn output with muscle. The first-order option and file descriptor and option represent the file with the return-delimited list of genome reads. The second-order option and file descriptor and option represents the file with the reference genome. The third-order option and file descriptor and option represents the file with the blastn output of the reference genome.

plotsmall.pl.zip
Author: Julio Cesar Ignacio-Espinoza
Last Revision: Jan 2013
Description: plotSmall

sizeandlocation.pl.zip
Author: Julio Cesar Ignacio-Espinoza
Last Revision: Jan 2013
Description: SizeandLocation

detectsynandnonsyn.pl.zip
Author: Ann Gregory

mkselection.pl.zip
Author: Ann Gregory

remove_introns.pl.zip
Author: Ann Gregory

unique_fixed_polymorphisms.pl.zip
Author: Ann Gregory