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Population Genomics

DetectSynandNonSyn

detectsynandnonsyn.pl.zip
Author: Ann Gregory
Last Revision: Apr 2014
Description: From an alignment, this script will identify the total number of synonymous and nonsynonymous polymorphisms.

MKselection

mkselection.pl.zip
Author: Ann Gregory
Last Revision: Apr 2014
Description: Takes the input from detectsynandnonsyn.pl (above) and runs MK tests and determines if the gene is neutral, under positive selection or purifying selection.

remove_introns

remove_introns.pl.zip
Author: Ann Gregory
Last Revision: Apr 2014
Description: Using a list of identified pairs of genes with potential introns, this script removes and concatenates the two gene ends into the singe gene.

Syn_16S_Barcode_Identifier

syn_16s_barcode_identifier.sh.zip Author: Ann Gregory
Last Revision: June 2015
Description:

unique_fixed_polymorphisms

unique_fixed_polymorphisms.pl.zip
Author: Ann Gregory
Last Revision: Apr 2014
Description: Scans an alignment of population from two sites and looks for unique, fixed polymorphisms indicative of local adaptation.

bioinformatics/scripts/popgen.1433460955.txt.gz · Last modified: 2015/10/15 22:47 (external edit)
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