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Table of Contents
Sequence analysis Toolkit
Build
Author :
Brandon Webb, Zachary Hare, Devesh Chourasiya
Last Revision :
May 2013
Description :
Build.PL automatically installs all necessary resources and files to the user-specified directory or default directory.
TrimPipe
Author :
Jonathan Cummings
Last Revision :
Apr 2013
Description :
TrimPipe - Given a directory with .fastq or .fastq.gz files, will trim the files with DynamicTrim.pl and then use FastQC to perform quality analysis.
Runhist
Author :
Jonathan Cummings
Last Revision :
Apr 2013
Description :
Runhist - Given the input directory, output histogram plots to the output directory in pdf form.
MRPlot
Author :
Brandon Webb
Last Revision :
Apr 2013
Description :
MRPlot - Given a BLAST or CAMERA ,csv output, parse and format an output .csv file (CAMERA dependent), recruitment plot file, and GNU plot file.
MCLSyntenyPlotting
Author :
Brandon Webb
Last Revision :
Apr 2013
Description :
MCLSytenyPlotting – Given a MCL output file, parse and format an synteny csv file for GNU plotting
LatticeHist
Author :
Jonathan Cummings
Last Revision :
Apr 2013
Description :
Creates a lattice of histograms using data from a specific csv file.
TaxonomySearch
Author :
Brandon Webb
Last Revision :
Apr 2013
Description :
Given a .csv formated file containing GIvalues of each genome, query the NCBI protein database and retrieve the corresponding taxonomy name.
Combiner
Author :
Jonathan Cummings
Last Revision :
Apr 2013
Description :
Given two fastq files and an output file, combine the two input files into the output file.
