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Sequence analysis Toolkit

Build

Author :

Brandon Webb, Zachary Hare, Devesh Chourasiya

Last Revision :

May 2013

Description :

Build.PL automatically installs all necessary resources and files to the user-specified directory or default directory.

TrimPipe

Author :

Jonathan Cummings

Last Revision :

Apr 2013

Description :

TrimPipe - Given a directory with .fastq or .fastq.gz files, will trim the files with DynamicTrim.pl and then use FastQC to perform quality analysis.

Runhist

Author :

Jonathan Cummings

Last Revision :

Apr 2013

Description :

Runhist - Given the input directory, output histogram plots to the output directory in pdf form.

MRPlot

Author :

Brandon Webb

Last Revision :

Apr 2013

Description :

MRPlot - Given a BLAST or CAMERA ,csv output, parse and format an output .csv file (CAMERA dependent), recruitment plot file, and GNU plot file.

MCLSyntenyPlotting

Author :

Brandon Webb

Last Revision :

Apr 2013

Description :

MCLSytenyPlotting – Given a MCL output file, parse and format an synteny csv file for GNU plotting

LatticeHist

Author :

Jonathan Cummings

Last Revision :

Apr 2013

Description :

Creates a lattice of histograms using data from a specific csv file.

TaxonomySearch

Author :

Brandon Webb

Last Revision :

Apr 2013

Description :

Given a .csv formated file containing GIvalues of each genome, query the NCBI protein database and retrieve the corresponding taxonomy name.

Combiner

Author :

Jonathan Cummings

Last Revision :

Apr 2013

Description :

Given two fastq files and an output file, combine the two input files into the output file.

bioinformatics/scripts/toolkit.1391648462.txt.gz · Last modified: 2015/10/15 22:47 (external edit)
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